The annotation of therapeutic phages
ESCMID eAcademy. Edwards R. 06/07/22; 364767
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McNair K, Bailey BA, Edwards RA. 2012. PHACTS, a computational approach to classifying the lifestyle of phages. Bioinformatics 28:614–618. http://dx.doi.org/10.1093/bioinformatics/bts014
Hockenberry AJ, Wilke CO. 2021. BACPHLIP: predicting bacteriophage lifestyle from conserved protein domains. PeerJ 9:e11396. http://dx.doi.org/10.7717/peerj.11396
Zhou CE, Malfatti SA, Kimbrel JA, Philipson CW, McNair KE, Hamilton TC, Edwards RA, Souza BE. 2019. multiPhATE: bioinformatics pipeline for functional annotation of phage isolates. Bioinformatics. http://dx.doi.org/10.1093/bioinformatics/btz258
Ecale Zhou CL, Kimbrel J, Edwards R, McNair K, Souza BA, Malfatti S. 2021. MultiPhATE2: code for functional annotation and comparison of phage genomes. G3 11. http://dx.doi.org/10.1093/g3journal/jkab074
Philipson CW, Voegtly LJ, Lueder MR, Long KA, Rice GK, Frey KG, Biswas B, Cer RZ, Hamilton T, Bishop-Lilly KA. 2018. Characterizing Phage Genomes for Therapeutic Applications. Viruses 10. http://dx.doi.org/10.3390/v10040188
Hockenberry AJ, Wilke CO. 2021. BACPHLIP: predicting bacteriophage lifestyle from conserved protein domains. PeerJ 9:e11396. http://dx.doi.org/10.7717/peerj.11396
Zhou CE, Malfatti SA, Kimbrel JA, Philipson CW, McNair KE, Hamilton TC, Edwards RA, Souza BE. 2019. multiPhATE: bioinformatics pipeline for functional annotation of phage isolates. Bioinformatics. http://dx.doi.org/10.1093/bioinformatics/btz258
Ecale Zhou CL, Kimbrel J, Edwards R, McNair K, Souza BA, Malfatti S. 2021. MultiPhATE2: code for functional annotation and comparison of phage genomes. G3 11. http://dx.doi.org/10.1093/g3journal/jkab074
Philipson CW, Voegtly LJ, Lueder MR, Long KA, Rice GK, Frey KG, Biswas B, Cer RZ, Hamilton T, Bishop-Lilly KA. 2018. Characterizing Phage Genomes for Therapeutic Applications. Viruses 10. http://dx.doi.org/10.3390/v10040188
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